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After install go to /opt/RepeatMasker and run the Configuration Program:
# perl ./configure
* The full path including the name for the TRF program.
TRF_PRGM: /usr/bin/trf
Add a Search Engine:
1. CrossMatch: you should obtain this yourself, with the proper
license, following the instructions here http://www.phrap.org/
2. RMBlast - NCBI Blast with RepeatMasker extensions: this is
available from SBo.
3. HMMER3.1 & DFAM: this is available from SBo.
4. ABBlast/WUBlast (required by DupMasker): you should obtain this
yourself, with the proper license, following the instructions here
https://blast.advbiocomp.com/licensing/
* RMBlast (rmblastn) INSTALLATION PATH
/usr/bin
* HMMER INSTALLATION PATH
/usr/bin
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