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After install go fo /opt/RepeatMasker and run the RepeatMasker
Configuration Program:
# perl ./configure
Paths are as follows:
**PERL PROGRAM**
/usr/bin/perl
**REPEATMASKER INSTALLATION DIRECTORY**
/opt/RepeatMasker
**TRF PROGRAM**
/usr/bin/trf
Add a Search Engine:
1. CrossMatch: you should obtain this yourself, with the proper
license, following the instructions here http://www.phrap.org/
2. RMBlast - NCBI Blast with RepeatMasker extensions: this is
available from SBo.
3. WUBlast/ABBlast (required by DupMasker): you should obtain this
yourself, with the proper license, following the instructions here
https://blast.advbiocomp.com/licensing/
4. HMMER3.1 & DFAM: this is available from SBo.
**RMBlast (rmblastn) INSTALLATION PATH**
/usr/bin
**HMMER INSTALLATION PATH**
/usr/bin
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