| Commit message (Expand) | Author | Age | Files | Lines |
... | |
* | academic/EMBOSS: Remove .la files....Signed-off-by: B. Watson <yalhcru@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| B. Watson | 2022-03-08 | 1 | -1/+3 |
* | academic/EMBASSY: Remove .la files....Signed-off-by: B. Watson <yalhcru@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| B. Watson | 2022-03-08 | 1 | -1/+3 |
* | academic/glpk: Remove .la files....Signed-off-by: B. Watson <yalhcru@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| B. Watson | 2022-03-08 | 1 | -0/+2 |
* | academic/gcompris-qt: Updated for version 2.3....Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Willy Sudiarto Raharjo | 2022-03-07 | 2 | -6/+6 |
* | academic/Mnemosyne: Removed (requires nonexistent PyQtWebEngine dep)....Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| B. Watson | 2022-03-07 | 6 | -150/+0 |
* | academic/glpk: Don't ship *.la files....Signed-off-by: Erich Ritz <erich.public@protonmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Erich Ritz | 2022-03-06 | 1 | -0/+3 |
* | academic/pysam: Use internal htslib-1.14...Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| brobr | 2022-03-05 | 1 | -6/+1 |
* | academic/samtools: Update to version 1.15...Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| brobr | 2022-03-05 | 2 | -5/+5 |
* | academic/bcftools: Update to version 1.15...Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| brobr | 2022-03-05 | 2 | -5/+5 |
* | academic/cistrome-MACS: Handle content-disposition download....Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
| Matteo Bernardini | 2022-03-05 | 1 | -1/+8 |
* | academic/FCSalyzer: Handle url-encoded filenames....Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
| Matteo Bernardini | 2022-03-05 | 1 | -1/+1 |
* | academic/tuxmath: Rename blits. Remove dupe lan player....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-04 | 3 | -0/+83 |
* | academic/avogadro: Removed....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-04 | 7 | -210/+0 |
* | academic/QtiPlot: Removed....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-04 | 14 | -561/+0 |
* | academic/verilator: Updated for version 4.218....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-04 | 2 | -7/+9 |
* | academic/tuxmath: Use -std=gnu11 and -fcommon....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-04 | 1 | -5/+6 |
* | academic/pyCRAC: Update MD5SUM....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-04 | 1 | -2/+2 |
* | academic/edsim51di: Update DOWNLOAD to https....NOTE: the md5sum has changed.
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-04 | 1 | -4/+4 |
* | academic/ugene: Use -std=c++11....I also reversed some of the -Werror flags to get this to build.
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-03 | 1 | -2/+5 |
* | academic/xflr5: Update DOWNLOAD....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-03 | 2 | -2/+3 |
* | academic/verilog: Updated for version 11.0....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-03 | 2 | -7/+9 |
* | academic/tophat: Use -std=c++14....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-03 | 1 | -1/+2 |
* | academic/bowtie2-legacy: Patch source....Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
| Dave Woodfall | 2022-03-03 | 1 | -1/+2 |
* | various: Use zulu jdk builds for REQUIRES....As noted in the FAQ, you can still use Oracle's JDK for
building or running, but we'll default to the Zulu builds
in the REQUIRES since they are easily downloadable.
Zulu is a good default for us at SBo since it is available
for both 32 and 64 bit, freely downloadable and compatible
and they provide builds for all the LTS branches.
We don't currently have builds for Adoptium (previously
AdoptOpenJDK, not part of the Eclipse Foundation), but if
someone wants to submit builds for them, we can include them
too. Note though that they do not provide 32 bit builds.
Software should run with either Zulu or Oracle's JDK, or
indeed any other builds of OpenJDK, so if I have broken your
build with this change, apologies. This should be rare and
we can change the REQUIRES back to jdkX in that case and note
it in the README, but I do not expect this should be the case.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 7 | -8/+9 |
* | academic/archaeopteryx: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/jalview: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/sequence-analysis: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/snpEff: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/trimmomatic: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/wehi-cellsymphony: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/wehi-deid: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/wehi-hackit: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/wehi-weasel: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/aliview: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/TreeGraph: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/FCSalyzer: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/EMBOSS: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/Data2FCS: Use zulu-openjdk11....Before the adoptopenjdk packages was switched to JDK12, it was
JDK11.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/edsim51di: Use zulu-openjdk7....openjdk7 currently ftb.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/GeoGebra: Use zulu-openjdk7....openjdk7 currently ftb.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-03 | 1 | -1/+1 |
* | academic/Kst: patch to fix the path for H5Cpp.h file...Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Fellype do Nascimento | 2022-03-03 | 3 | -4/+37 |
* | academic/Data2FCS: Handle url-encoded filenames....Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Matteo Bernardini | 2022-03-01 | 1 | -2/+2 |
* | academic/tilem: Fix for gcc >= 10.x....Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Matteo Bernardini | 2022-03-01 | 1 | -1/+1 |
* | academic/t_coffee: Updated for version 13.45.58.c355d11....Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Matteo Bernardini | 2022-03-01 | 3 | -13/+17 |
* | academic/sigrok-cli: Updated for version 20220222_525f481....Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Matteo Bernardini | 2022-03-01 | 2 | -6/+7 |
* | academic/scilab: Note that the download url is not wget-friendly....Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Matteo Bernardini | 2022-03-01 | 1 | -0/+3 |
* | academic/seaview: Removed the treerecs dependency (ftb)....Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Matteo Bernardini | 2022-03-01 | 2 | -2/+1 |
* | academic/wxMaxima: Fix github tarball handling....Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-01 | 2 | -2/+2 |
* | academic/z3: Fix github tarball handling....Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-01 | 2 | -2/+2 |
* | academic/mathjax2: Fix github tarball handling....Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
| Andrew Clemons | 2022-03-01 | 2 | -6/+5 |