The purpose of the /media directory is to provide a consistent place across different systems for users and applications to mount removeable media. For example, this might be used by KDE's Media Manager feature in Konqueror. That will look into /etc/fstab to determine where to mount a volume, and for now this still defaults to using /mnt (e.g. /mnt/cdrom as the cdrom mount point), but you may edit your /etc/fstab if you'd like to follow the FHS recommendations. See the /mnt directory also.