From 215dfddbe284fa193a46b2791357387f1cd31cdf Mon Sep 17 00:00:00 2001 From: brobr Date: Thu, 19 May 2022 23:53:21 +0100 Subject: academic/pysam: Updated for version 0.19.0. Signed-off-by: Andrew Clemons Signed-off-by: Willy Sudiarto Raharjo --- academic/pysam/pysam.SlackBuild | 11 ++++++++--- academic/pysam/pysam.info | 6 +++--- 2 files changed, 11 insertions(+), 6 deletions(-) (limited to 'academic/pysam') diff --git a/academic/pysam/pysam.SlackBuild b/academic/pysam/pysam.SlackBuild index 369da78f83..2489d6cd26 100644 --- a/academic/pysam/pysam.SlackBuild +++ b/academic/pysam/pysam.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for pysam -# Copyright 2017-2021 Rob van Nues +# Copyright 2017-2022 Rob van Nues # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -25,8 +25,8 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=pysam -VERSION=${VERSION:-0.18.0} -BUILD=${BUILD:-2} +VERSION=${VERSION:-0.19.0} +BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -80,6 +80,11 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; +# pysam now at htslib-1.15; SBo-htslib is at 1.15.1: +# can use system htslib: +export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX +export HTSLIB_INCLUDE_DIR=/usr/include + #the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook chmod 644 pysam.egg-info/* diff --git a/academic/pysam/pysam.info b/academic/pysam/pysam.info index ba82e9ba82..2df162ea2d 100644 --- a/academic/pysam/pysam.info +++ b/academic/pysam/pysam.info @@ -1,8 +1,8 @@ PRGNAM="pysam" -VERSION="0.18.0" +VERSION="0.19.0" HOMEPAGE="https://github.com/pysam-developers/pysam" -DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.18.0.tar.gz" -MD5SUM="9748f447dee300d57c64960ae2ceab2d" +DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.19.0.tar.gz" +MD5SUM="010374b2a33238c6e3236a1bcfded096" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="htslib" -- cgit v1.2.3-80-g2a13