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| author |   Rob van Nues <rvnues at tesco {dot} net> | 2018-01-21 08:55:13 +0700 |
|---|---|---|
| committer |   Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2018-01-27 07:43:46 +0700 |
| commit | faca3e09ed0ae0831e5edf81acec28092c118a39 (patch) | |
| tree | 7df2ee3070403fa151784e815ce489f2c423187d /academic/pysam/README | |
| parent | a232cb8784ce8850350ac137c1f1ebd18d932795 (diff) | |
| download | slackbuilds-faca3e09ed0ae0831e5edf81acec28092c118a39.tar.gz slackbuilds-faca3e09ed0ae0831e5edf81acec28092c118a39.tar.xz | |
academic/pysam: Updated for version 0.13.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/pysam/README')
| -rw-r--r-- | academic/pysam/README | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/academic/pysam/README b/academic/pysam/README index 605936f076..c21a4ed81d 100644 --- a/academic/pysam/README +++ b/academic/pysam/README @@ -1,7 +1,11 @@ Pysam is a python module for reading and manipulating files in the SAM/BAM format. The SAM/BAM format is a way to store efficiently large -numbers of alignments (`Li 2009`_), such as those routinely created by +numbers of alignments (Li 2009), such as those routinely created by next-generation sequencing methods. Pysam is a lightweight wrapper of the samtools_ C-API. Pysam also -includes an interface for tabix_. +includes an interface for tabix. + +Reference: Li et al. Bioinformatics. 2009 Aug 15;25(16):2078-9. +doi: 10.1093/bioinformatics/btp352. +The Sequence Alignment/Map format and SAMtools. |